Novel organ-specific genetic factors for quantitative resistance to late blight in potato.
Identifieur interne : 000434 ( Main/Exploration ); précédent : 000433; suivant : 000435Novel organ-specific genetic factors for quantitative resistance to late blight in potato.
Auteurs : Deissy Katherine Juyo Rojas [Colombie] ; Johana Carolina Soto Sedano [Colombie] ; Agim Ballvora [Allemagne] ; Jens Léon [Allemagne] ; Teresa Mosquera Vásquez [Colombie]Source :
- PloS one [ 1932-6203 ] ; 2019.
Descripteurs français
- KwdFr :
- Cartographie chromosomique (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (parasitologie), Phytophthora infestans (isolement et purification), Polymorphisme de nucléotide simple (MeSH), Protéines végétales (génétique), Résistance à la maladie (MeSH), Solanum tuberosum (génétique), Étude d'association pangénomique (MeSH).
- MESH :
- génétique : Maladies des plantes, Protéines végétales, Solanum tuberosum.
- isolement et purification : Phytophthora infestans.
- parasitologie : Maladies des plantes.
- Cartographie chromosomique, Locus de caractère quantitatif, Polymorphisme de nucléotide simple, Résistance à la maladie, Étude d'association pangénomique.
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), Disease Resistance (MeSH), Genome-Wide Association Study (MeSH), Phytophthora infestans (isolation & purification), Plant Diseases (genetics), Plant Diseases (parasitology), Plant Proteins (genetics), Polymorphism, Single Nucleotide (MeSH), Quantitative Trait Loci (MeSH), Solanum tuberosum (genetics).
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Plant Diseases, Solanum tuberosum.
- isolation & purification : Phytophthora infestans.
- parasitology : Plant Diseases.
- Chromosome Mapping, Disease Resistance, Genome-Wide Association Study, Polymorphism, Single Nucleotide, Quantitative Trait Loci.
Abstract
Potato, Solanum tuberosum, is one of the major consumed food in the world, being the basis of the diet of millions of people. The main limiting and destructive disease of potato is late blight, caused by Phytophtora infestans. Here, we present a multi-environmental analysis of the response to P. infestans using an association panel of 150 accessions of S. tuberosum Group Phureja, evaluated in two localities in Colombia. Disease resistance data were merged with a genotyping matrix of 83,862 SNPs obtained by 2b-restriction site-associated DNA and Genotyping by sequencing approaches into a Genome-wide association study. We are reporting 16 organ-specific QTL conferring resistance to late blight. These QTL explain between 13.7% and 50.9% of the phenotypic variance. Six and ten QTL were detected for resistance response in leaves and stem, respectively. In silico analysis revealed 15 candidate genes for resistance to late blight. Four of them have no functional genome annotation, while eleven candidate genes code for diverse proteins, including a leucine-rich repeat kinase.
DOI: 10.1371/journal.pone.0213818
PubMed: 31310605
PubMed Central: PMC6634379
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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(MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (parasitologie)</term><term>Phytophthora infestans (isolement et purification)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Protéines végétales (génétique)</term><term>Résistance à la maladie (MeSH)</term><term>Solanum tuberosum (génétique)</term><term>Étude d'association pangénomique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Diseases</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Maladies des plantes</term><term>Protéines végétales</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Disease Resistance</term><term>Genome-Wide Association Study</term><term>Polymorphism, Single Nucleotide</term><term>Quantitative Trait Loci</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Locus de caractère quantitatif</term><term>Polymorphisme de nucléotide simple</term><term>Résistance à la maladie</term><term>Étude d'association pangénomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Potato, Solanum tuberosum, is one of the major consumed food in the world, being the basis of the diet of millions of people. The main limiting and destructive disease of potato is late blight, caused by Phytophtora infestans. Here, we present a multi-environmental analysis of the response to P. infestans using an association panel of 150 accessions of S. tuberosum Group Phureja, evaluated in two localities in Colombia. Disease resistance data were merged with a genotyping matrix of 83,862 SNPs obtained by 2b-restriction site-associated DNA and Genotyping by sequencing approaches into a Genome-wide association study. We are reporting 16 organ-specific QTL conferring resistance to late blight. These QTL explain between 13.7% and 50.9% of the phenotypic variance. Six and ten QTL were detected for resistance response in leaves and stem, respectively. In silico analysis revealed 15 candidate genes for resistance to late blight. Four of them have no functional genome annotation, while eleven candidate genes code for diverse proteins, including a leucine-rich repeat kinase.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31310605</PMID><DateCompleted><Year>2020</Year><Month>02</Month><Day>18</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><Issue>7</Issue><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Novel organ-specific genetic factors for quantitative resistance to late blight in potato.</ArticleTitle><Pagination><MedlinePgn>e0213818</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0213818</ELocationID><Abstract><AbstractText>Potato, Solanum tuberosum, is one of the major consumed food in the world, being the basis of the diet of millions of people. The main limiting and destructive disease of potato is late blight, caused by Phytophtora infestans. Here, we present a multi-environmental analysis of the response to P. infestans using an association panel of 150 accessions of S. tuberosum Group Phureja, evaluated in two localities in Colombia. Disease resistance data were merged with a genotyping matrix of 83,862 SNPs obtained by 2b-restriction site-associated DNA and Genotyping by sequencing approaches into a Genome-wide association study. We are reporting 16 organ-specific QTL conferring resistance to late blight. These QTL explain between 13.7% and 50.9% of the phenotypic variance. Six and ten QTL were detected for resistance response in leaves and stem, respectively. In silico analysis revealed 15 candidate genes for resistance to late blight. Four of them have no functional genome annotation, while eleven candidate genes code for diverse proteins, including a leucine-rich repeat kinase.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Juyo Rojas</LastName><ForeName>Deissy Katherine</ForeName><Initials>DK</Initials><AffiliationInfo><Affiliation>Universidad Nacional de Colombia, sede Bogotá, Facultad de Ciencias Agrarias, Bogotá, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Soto Sedano</LastName><ForeName>Johana Carolina</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Universidad Nacional de Colombia, sede Bogotá, Facultad de Ciencias, Bogotá, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ballvora</LastName><ForeName>Agim</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>University of Bonn, Institute of Crop Science and Resource Conservation Plant Breeding, Katzenburgweg, Bonn, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Léon</LastName><ForeName>Jens</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>University of Bonn, Institute of Crop Science and Resource Conservation Plant Breeding, Katzenburgweg, Bonn, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mosquera Vásquez</LastName><ForeName>Teresa</ForeName><Initials>T</Initials><Identifier Source="ORCID">0000-0003-4854-1079</Identifier><AffiliationInfo><Affiliation>Universidad Nacional de Colombia, sede Bogotá, Facultad de Ciencias Agrarias, Bogotá, Colombia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>07</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055106" MajorTopicYN="N">Genome-Wide Association Study</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="Y">Phytophthora infestans</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><CoiStatement>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors have declared that no competing interests exist.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>02</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>06</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>7</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>7</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>2</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31310605</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0213818</ArticleId><ArticleId IdType="pii">PONE-D-19-05822</ArticleId><ArticleId 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name="Colombie"><noRegion><name sortKey="Juyo Rojas, Deissy Katherine" sort="Juyo Rojas, Deissy Katherine" uniqKey="Juyo Rojas D" first="Deissy Katherine" last="Juyo Rojas">Deissy Katherine Juyo Rojas</name></noRegion><name sortKey="Mosquera Vasquez, Teresa" sort="Mosquera Vasquez, Teresa" uniqKey="Mosquera Vasquez T" first="Teresa" last="Mosquera Vásquez">Teresa Mosquera Vásquez</name><name sortKey="Soto Sedano, Johana Carolina" sort="Soto Sedano, Johana Carolina" uniqKey="Soto Sedano J" first="Johana Carolina" last="Soto Sedano">Johana Carolina Soto Sedano</name></country><country name="Allemagne"><region name="Rhénanie-du-Nord-Westphalie"><name sortKey="Ballvora, Agim" sort="Ballvora, Agim" uniqKey="Ballvora A" first="Agim" last="Ballvora">Agim Ballvora</name></region><name sortKey="Leon, Jens" sort="Leon, Jens" uniqKey="Leon J" first="Jens" last="Léon">Jens Léon</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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